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Human U6 promoter:

Aaggtcgggcaggaagagggcctatttcccatgattccttcatatttgcatatacgatacaaggctgttagagagataattagaattaatttgactgtaaacacaaagatattagtacaaaatacgtgacgtagaaagtaataatttcttgggtagtttgcagtttttaaaattatgttttaaaatggactatcatatgcttaccgtaacttgaaagtatttcgatttcttggctttatatatcttgtggaaaggacgaaacaccgtgctcgcttcggcagcacatatactaaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcaaattcgtgaagcgttccatatttttacatcaggttgtttttctgtttttacatcaggttgtttttctgtttggttttttttttacaccacgtttatacgccggtgcacggtttacca

(TATA box and the transcription start site)

Mouse U6 promoter:

Gatccgacgccgccatctctaggcccgcgccggccccctcgcacagacttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttcctagtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagctacattttacatgataggcttggatttctataagagatacaaatactaaattattattttaaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagactataaatatcccttggagaaaagccttgtttgtgctcgcttcggcagcacatatactaaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcaaattcgtgaagcgttccatattttgttcctcagaggaactgacaagcaccctaacatcctattggaggctcactcacgttttt

(TATA box and the transcription start site)

根据Human/Mouse保守序列设计引物,以下序列为常用引物:

Forward: GCTTCGGCAGCACATATACTAAAAT

Reverse: CGCTTCACGAATTTGCGTGTCAT

Human H1 promoter:

Ttatagggagctgaagggaagggggtcacagtaggtggcatcgttcctttctgactgcccgccccccgcatgccgtcccgcgatattgagctccgaacctctcgccctgccgccgccggtgctccgtcgccgccgcgccgccatggaattcgaacgctgacgtcatcaacccgctccaaggaatcgcgggcccagtgtcactaggcgggaacacccagcgcgcgtgcgccctggcaggaagatggctgtgagggacaggggagtggcgccctgcaatatttgcatgtcgctatgtgttctgggaaatcaccataaacgtgaaatgtctttggatttgggaatcttataagttctgtatgagaccactctttcccatagggcggagggaagctcatcagtggggccacgagctgagtgcgtcctgtcactccactcccatgtcccttgggaaggtctgagactagggccagaggcggccctaacagggctctccctgagcttcggggaggtgagttcccagagaacggggctccgcgcgag

(TATA box and the transcription start site)

5 Replies to “人和小鼠U6和H1启动子序列及qPCR引物”

  1. 请问u6这个内参逆转录和qpcr的步骤和circRNA是一样的吗,我最近跑了一次circRNA和gapdh都能扩增出来但是U6跑不出来。

  2. 请问mU6启动子末尾的gccttgtttg里面,最后tg也是启动子的一部分吗,我看snapgene里面mu6的特征到gccttgtt就结束了。

  3. 请问U6启动子有物种特异性吗,鼠源的启动子可以在人细胞中转录吗

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